n-Adyen and Shopify Connect Natively. Reconciling What Each One Shows Still Takes Work.
Adyen has an official Shopify app that lets a store use Adyen as its payment provider, handling standard checkout, refunds, and payment method display right through Shopify's own checkout flow. It covers the standard single-store case well. Where it gets thinner is anything outside that: multiple Shopify stores settling through one Adyen account, a marketplace-style model, or reconciling Adyen's settlement detail against Shopify's own order and fee data line by line.
How people usually connect Shopify and Adyen
The official app covers the core flow for a standard, single-store setup: install it, map which payment methods should appear, and Shopify's checkout runs through Adyen underneath. For anything beyond that, businesses either live with Shopify's own order-level payment summary, which doesn't show full settlement detail, or export from both platforms and reconcile the two manually.
Where the gap is
Shopify shows that an order got paid. Adyen's settlement report shows what actually landed in the bank after fees. Across more than one sales channel, or more than one Shopify store running through a shared Adyen account, those two numbers rarely line up on their own, especially once refunds and partial captures split differently depending on which report you're reading.
What we've built on top of Adyen and Shopify
A multi-brand retailer ran several Shopify stores, all settling through one shared Adyen account to keep processing consolidated. The gap showed up every month at close: each store's finance view only had Shopify's order totals, not what actually hit the bank after Adyen's fees, so someone was manually splitting one combined Adyen settlement report across brands, line by line, before any of the numbers meant anything to the people running each store.
We built the matching the other way. Each Adyen settlement transaction gets tagged automatically to the specific Shopify store and order it came from, with fees allocated to the right brand as part of that same pass. The monthly close now starts from numbers that are already sorted by store, not a flat settlement file nobody wanted to touch by hand. The team that used to spend the first few days of every close just splitting the file spends that time on the close itself instead.
Running Adyen and Shopify together and still splitting the settlement report by hand?
A native app connects the checkout. It doesn't reconcile the settlement detail for you, especially across more than one store. Tell us what your close actually looks like right now, and if it's a different pair of platforms entirely, that's fine too; the matching problem looks the same either way.
Let's talk